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TCGA CNV
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how to analyze TCGA CNV data
TCGA CNV
correlation between mRNA exprssion and CNV
updated 8.2 years ago by
spulido99
• 0 • written 9.2 years ago by
ycding
▴ 10
0
votes
4
replies
1.9k
views
Using cn.MOPs to estimate CNVs in tumors without reference normal
cn.mops
cnvtools
tcga cnv
updated 8.6 years ago by
Günter Klambauer
▴ 540 • written 8.6 years ago by
vakul.mohanty
▴ 20
27
votes
21
replies
23k
views
Mapping genome regions to gene symbols
tcga cnv
gene symbol
coordinate
updated 18 months ago by
James W. MacDonald
66k • written 9.1 years ago by
NS
▴ 60
3 results • Page
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Comment: Volcano plot of scRNA-seq data not "centered"
by
Michael Love
42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
ATpoint
★ 4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai
by
atan
• 0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …
Comment: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
by
jovel_juan
▴ 30
enrichPlot requirements are rather low. All what it needs is to provide few columns named specifically. I student of mine wrote the first v…
Votes
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
Seurat to SingleCellExperiment Converting error in MAC
Error when converting Seurat to SingleCellExperiment
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